Clinical and Diagnostic Laboratory Immunology, March 2003, p. 195-201, Vol. 10, No. 2
1071-412X/03/$08.00+0 DOI: 10.1128/CDLI.10.2.195-201.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
Department of Tissue Typing, Finnish Red Cross Blood Transfusion ServiceHelsinki,1 Department of Pediatrics, Turku University Central Hospital,2 Turku Center for Biotechnology, University of Turku and Åbo Akademi University, Turku, Finland,3 Department of Laboratory Medicine, Section of M.I.G., Lund University, Lund, Sweden4
Received 17 June 2002/ Returned for modification 6 September 2002/ Accepted 11 November 2002
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The two isotypic forms of C4, C4A and C4B, have over 99% gene homology. The isotype specificity is determined by four amino acids; C4A carries P1101C1102L1105D1106, whereas the sequence L1101S1102I1105H1106 is specific for C4B (5, 23). The two isotypes also differ in their covalent binding activities. The binding reaction of C4B is very fast, with a half-life less than 1 s, compared to the 10 s for C4A (14). C4B has higher hemolytic activity than C4A, and it binds preferentially to free hydroxyl groups on bacterial surface polysaccharides. In contrast to C4A, C4B is found in all species of mammals studied and can be regarded as more important in defending against pathogens (13, 32). C4B deficiency, manifested as low serum concentration or total absence of the protein, may result from gene deletion or nonfunctionality of the gene due to conversion or mutation. In the North American Caucasian population, partial C4B deficiency is quite common, with a gene frequency of 18.3%, whereas total C4B deficiency was found only in two individuals among the 150 subjects studied (8). In Finland, the estimated frequency for total C4B deficiency is 8% (M.-L. Lokki, unpublished data).
Complete C4B deficiency predisposes for bacterial meningitis and impairs the host response for enveloped viruses (7, 33). Finnish patients with C4B deficiency manifest urticaria eruptions and vasculitis-related joint symptoms, indicating an inadequacy in immune complex clearance (S. Meri, personal communication). In viral infection, the complement activation and resulting complement cleavage products enhance the neutralizing function of immunoglobulin M (IgM) and IgG antibodies (30). Thus, complement provides an essential link between innate and adaptive immunity. Complement binding increases immunogenicity of an antigen and B cells become stimulated through complement receptors without T-cell-dependent antibody responses. Studies of C4-deficient mice show impaired B-cell priming, reduced number of germinal centers, and features of immune complex disease (E. Paul, O. O. Pozdnyakova, and M. C. Carroll, Abstr. 8th Eur. Meet. Complement Hum. Dis., Strasbourg, France, 2001) (16). Human mannan binding lectin (MBL) is involved in defense against bacterial, fungal and viral pathogens activating complement through the classical pathway. Low levels of MBL in serum due to variant alleles is associated with susceptibility to acute respiratory tract infections during childhood (22).
In this study, we report homozygous C4B deficiency and variant MBL genotype in a patient with increased susceptibility to severe infections. The patient suffered from recurrent meningitis during infancy and chronic draining fistulas and pararectal abscesses later on. Analysis of the C4 gene region revealed a deletion of CYP21A-TNXA-RP2-C4B genes on the maternal chromosome. On the paternal chromosome, cloning and sequencing showed the presence of C4A genes only due to the conversion of C4B to C4A gene resulting in total C4B deficiency. The patient also had a structurally heterozygous MBL genotype, which is known to have a diminishing effect on the activation of classical complement pathway through MBL binding. The data concur with our hypothesis of genetic instability as the reason for total C4B deficiency in this patient, and an increased susceptibility to infections due to defects of C4B and MBL.
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Immunologic evaluations were carried out numerous times. Normal numbers of peripheral blood leukocytes as well as T lymphocytes (CD3+), B lymphocytes (CD19+) and NK cells (CD16/56+) were detected. Serum immunoglobulin levels, IgG subclasses, serum pneumococcal IgG antibodies, and antibody responses to tetanus toxoid were normal, showing intact B-cell function. T cells responded normally to phytohemagglutinin, concanavalin A, and pokeweed mitogen. The lymph node biopsy showed normal histology. Phagocytosis, killing test, and nitroblue tetrazolium test measuring granulocyte function were within normal limits when determined using routine clinical laboratory methods.
At the age of 17 years in 1994, total hemolytic complement of the patient's serum was undetectable three times. The dose of 500 ml of fresh frozen plasma made the total hemolytic complement detectable, 18 U/ml, while after the infusion of 1,000 ml (22 ml/kg) it was 28 U/ml (reference interval 50 to 150 U/ml). The hemolytic complement values of the mother, father, brother, and sister were 30, 72, 29, and 53 U/ml, respectively. The patient's C4 concentrations were persistently low, 0.11 to 0.16 g/liter, being approximately 60% of normal values. C4 concentrations for the mother, father, brother and sister were 0.18, 0.22, 0.16, and 0.29 g/liter, respectively. C4 allotyping showed total C4B deficiency in the patient, as well as in the mother and brother (Fig. 1). All other complement components (C1q, C1r, C1s, C2, C3, C5, C6, C7, C8, and C9) were normal when measured by nephelometry and electroimmunoassay at three different times (February 1980, May 1997, and December 1997).
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FIG. 1. C4 phenotypes based on allotyping of the patient (Pa), sister (Si), control (Co), father (Fa), brother (Br), and mother (Mo). The C4 concentrations for the patient, sister, father, brother, and mother were 0.16, 0.29, 0.22, 0.16, and 0.18 g/liter, respectively, corresponding to the absence of C4B protein in the patient, brother, and mother.
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HLA and complement typing. The HLA-A, -B, and -C typing was performed using the standard microlymphocytotoxicity test (1). The HLA-B locus was sequenced to determine the subtype of B35 alleles as previously described (6). The HLA-DRB1 alleles were genotyped using a LIPA HLA-DRB1 kit (Innogenetics, Zwijndrecht, Belgium). Complement factor B and C4 allotypes were determined by immunofixation electrophoresis as previously described (27, 34). Factor B alleles F and S, as well as the subtypes FA and FB, were identified using a PCR-based method utilizing restriction polymorphism in the codon seven of exon two (21).
DNA preparation. Genomic DNA was extracted from acid-citrate dextrose anticoagulated peripheral blood samples by standard salting out method (28).
Analysis of MBL gene polymorphism. Variants of MBL due to mutations at codon 52, 54, and 57 in exon 1 of the MBL gene was determined by PCR amplification and restriction enzyme digestion of amplified DNA according to the method of Madsen et al. (25). Promoter variants at position -550 (H/L) and -221 (X/Y) were determined by allele specific PCR amplification (26).
RFLP analysis. Restriction fragment length polymorphism (RFLP) analysis was performed using probes for RP, C4, CYP21, and TNX genes and the Southern hybridization protocol described previously (19).
Isotype specific PCR. C4A/C4B specific PCR was performed according to the method of Barba et al. using primers L3, A-UP, and B-UP (4). PCR products were analyzed on 2% agarose gel and visualized by ethidium bromide staining.
PCR amplification of the C4d-region. A 2.9-kb fragment including the C4d-region was amplified with C4-specific primers C4E 22.5 and C4E 31.3 (24) using the Expand High-Fidelity PCR system (Boehringer Mannheim, Indianapolis, Ind.). The PCR conditions in a final volume of 100 µl were 0.2 mM concentrations of deoxynucleoside triphosphates (dNTPs), a 0.3 µM concentration of each primer, 500 ng of genomic DNA, and 2.6 U of High-Fidelity enzyme mix. The following PCR program was used: 1 cycle at 94°C for 2 min; 10 cycles at 94°C for 30 s, 66°C for 1 min, 72°C for 2 min; 20 cycles at 94°C for 30 s, 57°C for 1 min 72°C for 3 min; final extension at 72°C for 7 min, followed by a 4°C dwell. An aliquot of each PCR product was analyzed on agarose gel using ethidium bromide staining.
Cloning and sequencing the C4d-region. The amplification products were purified with QIAquick spin columns (Qiagen, Chatsworth, Calif.) and cloned into a TA-cloning vector using the Original TA Cloning Kit (Invitrogen, Carlsbad, Calif.). The plasmid DNA was extracted from 5 ml overnight cultures using QIAprep Spin Plasmid kit (Qiagen). The C4d insert was amplified by PCR and sequenced using the BigDye Terminator cycle sequencing ready reaction kit. Electrophoresis was performed with ABI PRISM 310 Genetic Analyzer (Applied Biosystems, Foster City, Calif.). The primers used in sequencing were C4E 25.3, C4E 26.5, C4E 27.3, C4E 28.5, and C4E 29.3 (24).
Restriction enzyme digestions with NlaIV and Eco0109I. The NlaIV restriction enzyme digestion was performed to further determine C4 isotypes. PCR products encompassing the C4d region were purified with ethanol precipitation and restriction digested with 4 U of NlaIV. The restriction fragments were analyzed on 2% agarose gel and detected with ethidium bromide. A 467-bp fragment represents C4B, while two fragments, 276 and 191 bp, represent C4A. The NlaIV digestion was also used to identify C4A and C4B clones. In addition, the patient's C4d clones were digested with Eco0109I to evaluate the isotype specific differences.
Analysis of C2 gene. Screening for the four known mutations of C2 gene in exons 2, 5, 6, and 11 was performed as described earlier (19).
Screening for known C4 mutations. The recently found site of a novel cystein deletion at codon 522 in exon 13 was studied using a mutation specific primer C4del13 (5' CATCACCTGGCACCCTCCTTTA 3') and reverse primer C4E14.3R (5' CTTGCCCATGTTGAGGGGCT 3') (K. L. Rupert, J. M. Moulds, Y. Yang, R. Warren, J. Reveille, F. C. Arnett, and C. Y. Yu, abstract from the XVIIIth Int. Complement Workshop, Immunopharmacology, 49:29, 2000). The PCR conditions were 100 ng of genomic DNA, 0.2 µM (each) primer, 100 mM Tris-HCl, 500 mM KCl, 15 mM MgCl2, 0.01% gelatin, 0.1 mM dNTPs, and 2.5 U of AmpliTaq Gold DNA polymerase (Roche Molecular Systems, Branchburg, N.J.). The following PCR program was used: 1 cycle at 94°C for 10 min; 35 cycles at 94°C for 30 s, 64°C for 45 s, 72°C for 1 min; final extension at 72°C for 10 min, followed by a 4°C dwell. An aliquot of the PCR product was analyzed using 1% agarose gel and ethidium bromide staining.
The amplification of exon 20 was performed using primers XC-9 and C420up described by Nordin Fredrikson et al. to detect a 1-bp deletion which abolishes an AciI restriction site (29). The amplification product was purified with ethanol precipitation, digested with AciI and separated on 3% MetaPhor agarose (FMC BioProducts, Rockland, Maine) to reveal the presence or absence of a cleavage site in the fragment.
To detect a 2-bp insertion in exon 29 originally described by Barba et al., a mutation specific primer C4ins29 (5' GCTCTGAGAACCAGTGACTGAGAG 3') was designed to be used with isotype specific primers A-down and B-down (3, 4). PCR was performed under standard reaction conditions with AmpliTaq Gold DNA polymerase using the following program: 10 min at 94°C; 30 s at 94°C, 45 s at 62°C, 1 min at 72°C for 38 cycles; ten minute hold at 72°C. Screening for the mutation in exon 29 was also confirmed by the PCR method described by Sullivan et al. (36).
Screening for new C4 mutations. PCR amplification of all 41 exons of C4 genes was performed using a 0.2 µM concentration of each primer, 100 ng of genomic DNA, 0.1 mM dNTPs and AmpliTaq, AmpliTaq Gold, or DyNAzyme EXT (Finnzymes, Espoo, Finland) DNA polymerase with the buffer recommended by the manufacturer (Triton-free buffer for samples to denaturing high-performance liquid chromatography [DHPLC] analysis). Samples for single-stranded conformation polymorphism analysis (SSCP) analysis were internally labeled by fluorescent [R110]dCTP (Applied Biosystems) with a final concentration of 0.5 µM. An aliquot of each amplification product was separated electrophoretically and visualized with ethidium bromide. Specific data for C4 primer sequences and thermal cycler conditions are available on request.
All 41 exons were subjected to SSCP analysis and 27 exons of them were additionally analyzed with DHPLC system. For SSCP the amplification products were purified by QIAquick PCR purification kit (Qiagen). Samples were prepared by combining 1 µl of PCR product, 0.5 µl of 0.3 M NaOH, 10 µl of deionized formamide and 0.5 µl of GeneScan [ROX] size standard (Applied Biosystems). The mixture was denatured for 5 min at 95°C and run under nondenaturing conditions using 5% GeneScan polymer with 10% glycerol on ABI PRISM 310 genetic analyzer. Tris-borate-EDTA (1x) with 10% glycerol was used as the electrode buffer. Injection time varied between 1 and 8 s at 15.0 kV, and samples were subjected to electrophoresis for 30 to 45 min at 13.0 kV at a temperature of 30°C. The change of a single base may cause a conformational change in the DNA molecule and affect the electrophoretic mobility.
DHPLC analysis was carried out using the Wave HS nucleic acid fragment analysis system (Transgenomic, Omaha, Nebr.). Prior to temperature modulated heteroduplex analysis (TMHA), PCR products were denatured at 95°C for 5 min and then gradually reannealed by slow cooling (-0.5°C/cycle) to 23°C. An aliquot of reannealed PCR product was automatically injected into the DNASeph column and eluted with constant flow rate of 0.9 ml/min and an acetonitrile gradient (2% increase in buffer B/min; buffer A consisting of 0.1 M triethylamine acetate and buffer B 0.1 M triethylamine acetate with 25% acetonitrile). Melting temperatures were estimated with WAVEmaker software (version 4.0.29) and the DHPLC Melt program (http://insertion.stanford.edu/melt.html). TMHA was performed with individual samples from patient and control DNA, and with a mixed sample in combined analysis. Equal amounts of their DNA was mixed and rehybridized in order to reveal possible differences in between their DNA sequences. PCR fragments with a change in the electrophoretic mobility (SSCP) or in the melting profile (DHPLC) were subjected to subsequent sequencing using the BigDye Terminator cycle sequencing ready reaction kit (Applied Biosystems) to determine the nature of the mutation. Electrophoresis was performed with ABI PRISM 310 or 3100 genetic analyzer.
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Southern blot analysis. To determine the genetic basis of the total C4B deficiency, the organization of MHC class III genes RP1 and RP2, C4A and C4B, CYP21A and CYP21B, as well as TNXA and TNXB, was studied. DNA samples of all family members were subjected to restriction enzyme mapping (Fig. 2). The 3.7- and 3.2-kb TaqI fragments for CYP21B and CYP21A genes, respectively, could be seen in all family members. In the patient and the mother, the 3.7-kb fragment was twice as intense as the 3.2-kb fragment. Thus, they carried a heterozygous deletion of CYP21A gene. The intensities of the 6.5- and 5.0-kb BamHI fragments representing TNXB and TNXA genes, respectively, showed a deletion on TNXA gene in the patient and the mother. The intensity of the 5.0-kb BamHI fragment identifying RP2 gene was decreased in the patient and the mother, indicating a deletion of RP2 gene on the maternal chromosome inherited by the patient. The 7.0-kb TaqI fragment specifying RP1-C4 long gene locus was present in all family members, as well as the fragment of 6.0 kb corresponding to RP2-C4 long locus. The 5.4-kb fragment for RP2-C4 short locus was seen in father and sister only. According to the intensities of the TaqI fragments, the patient had a missing long C4B gene inherited from the mother. In conclusion, the restriction data indicate that the patient has a deletion of four genes, CYP21A, TNXA, RP2, and C4B, inherited on the maternal chromosome, and two long C4 genes on the paternal chromosome (Fig. 3).
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FIG. 2. Southern blot analysis with TaqI and BamHI restriction digests showing a deletion of CYP21A, TNXA, RP2, and C4B genes on maternal haplotype inherited by the patient. The 7.0-, 6.0-, and 5.4-kb TaqI fragments represent RP1-C4 long, RP2-C4 long, and RP2-C4 short, respectively. The fragment intensities suggested that the patient had a missing C4B gene inherited on the maternal chromosome. The 3.7-kb TaqI fragment for CYP21B gene and the 3.2-kb TaqI fragment for CYP21A gene could be seen in all family members. However, the weaker intensity of the 3.2-kb fragment in the patient and the mother showed that they carried a heterozygous deletion of CYP21A gene. The 9.6- and 5.0-kb BamHI fragments corresponding to RP1 and RP2 genes showed decreased intensity of the 5.0-kb fragment in the patient and the mother. The intensities of the 6.5- and 5.0-kb BamHI fragments representing TNXB and TNXA genes, respectively, showed a deletion on TNXA gene in the patient and the mother. The restriction data indicate a deletion of four genes encompassing CYP21A, TNXA, RP2, and C4B on the maternal chromosome inherited by the patient. The samples are presented in the following order: patient (Pa), mother (Mo), father (Fa), brother (Br), and sister (Si).
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FIG. 3. Pedigree showing the MHC haplotypes with HLA and complotypes. Deleted genes on maternal chromosome are outlined with a dashed line, and the converted C4 gene of paternal origin is marked with bold line. The approximate locations and sizes of the restriction fragments are indicated at the bottom.
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Sequence analysis of C4d region. The known C4 allotype specific determinants are carried in exons 25, 28, and 29. In order to define the allotypes of two C4A genes on the chromosome inherited from the father, the C4d region of the patient and the father was cloned and sequenced. As a result, all the clones studied were of the same allotype C4A3a. Nucleotide alterations in intron 28 and exon 29 of these C4A3a clones specified one C4A3a gene and one long C4B gene converted to C4A3a-like.
Screening for mutations.
The converted C4B gene of the patient was screened for new mutations in the coding region by SSCP and sequencing. In all, 10 alterations were observed in the patient compared to the published C4A3 sequences M59816 and M59815 (42). However, none of these caused amino acid changes or prominent mutations (Table 1). Nucleotide 5494 in exon 28 was found to be either a T or a C, and a substitution, 5911G
A, in exon 29 was revealed. All the other alterations found were of intronic origin. The segments without variation in SSCP were subjected to further screening with DHPLC, TMHA, and sequencing, which revealed the presence of four additional alterations. One single nucleotide polymorphism (SNP) was found in exon 12, all other point mutations were in intronic regions (Table 1). The sequence variation detected in the patient has been recorded in Human Genome Variation Database HGVbase (9) (http://hgvbase.cgb.ki.se/) under identification numbers IND/SNP001026494-IND/SNP001026518. Previously described C2 and C4 mutations were not detected in this family.
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TABLE 1. Novel nucleotide alterations found in patient's C4 sequence
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In the studied family, the expressed C4A allotypes do not support strong protein expression of the converted C4B gene. Mutation screening revealed no mutations in the converted gene that would conclusively explain its nonfunctionality. However, several alterations in intronic regions were found. Insertion 1314-1315insC in intron 4 resides in a very close proximity to the branch point upstream of the 3' splicing site. The replacement 626C
T in intron 11 is located right after the 5' consensus sequence involved in the splicing reaction, and the 5840T/C heterozygosity in intron 28 is seen near the 3' branch point. It is not fully known how sequence variation affects the splicing of introns. A retroposon-like insertion in intron 13 generating abnormal mRNA splicing has been shown to lower C4 production in mice (44). In neurofibromatosis type 1, an intronic Alu sequence insertion causes defective gene expression due to interference of branch point recognition (41). In a study describing nonexpressed C4A and C4B genes due to a frameshift mutation in exon 29, the size of mRNA was normal yet the amount was reduced (24). Even though greater flexibility in the consensus sequences have been observed in higher eukaryotes, intronic point mutations may impede splicing or lead to the generation of cryptic splicing signals and exceptional splicing of precursor RNA. In this patient, the alterations found in the intronic regions may reduce if not prevent the expression of the converted C4A gene.
Congenital absence of C4 is most often associated with systemic lupus erythematosus-like syndrome (37). Also, an increased risk for bacterial infections has been reported. Of 46 children with bacterial meningitis, 11% were homozygous deficient for C4B versus 3% in 223 controls (33). In 29 white patients with bacteremic Streptococcus pneumoniae, Haemophilus influenzae, or Neisseria meningitidis infections, 14% had homozygous C4B deficiency compared to 2% in race-matched controls (7). However, there are studies that do not indicate C4B deficiency as a significant predisposing factor in bacterial meningitis (11, 15). Our patient had suffered from recurrent meningitis and chronic draining sacral fistulas. Intensive antibiotic and surgical treatments were ineffective. After empirical treatment with fresh frozen plasma, correcting the complement function temporarily, a prompt clinical recovery was noted. Interestingly, the plasma dose of 20 to 30 ml/kg of body weight, also used in replacement therapy of primary hypogammaglobulinemia (10), made the total hemolytic complement just detectable. In a patient with C2 deficiency and systemic lupus erythematosus, plasma therapy has been shown to induce a full clinical remission for 6 to 8 weeks and a brief restoration of hemolytic complement activity (35). In our patient, plasma therapy was given for 12 months and the patient has stayed free of severe infections thereafter. The treatment may have induced substitutive mechanisms to accommodate immune responses as it has had long-term effects without a continuous supply of C4B or MBL. A similar observation has previously been demonstrated after intravenous gammaglobulin treatment (2). In C1q deficient mice, a recent study shows that a small proportion of bone marrow cells is sufficient to restore normal C1q levels in serum (31).
In northern Europe, N. meningitidis is the major cause of meningitis (20). In the present study, the patient had a structurally heterozygous MBL genotype in addition to the homozygous C4B deficiency. Besides the normal MBL allele, the patient had a variant allele carrying the codon 54 substitution. In in vitro studies, a recombinant protein of the variant allele has been proved unstable (39). Moreover, from the heterozygous MBL trimers seven in eight have been postulated abnormal (38), yet in other studies they possess normal biochemical and functional characteristics (18). Anyhow, the variant MBL genotype of the patient produces a structurally variant protein and is known to associate with medium levels of MBL serum concentrations (26). MBL has been shown to bind to N. meningitidis and further the activation of C4 (20). The partial deficiency of MBL may result in poor activation of complement on encapsulated organisms, particularly in combination with C4B deficiency. In conclusion, the complete C4B deficiency together with the heterozygous state of MBL is indicated as the cause for increased susceptibility to infections in this patient. The restricted repertoire of HLA-B molecules may play a critical role in epitope recognition and antigen presentation in immune defense against pathogenic microbes.
We thank Marjaana Mustonen for her technical assistance with complement typing and Tuija Kyrölä for DNA sequencing and upkeep of the Wave apparatus. We thank Yung Yu for providing C4 primers to our laboratory.
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