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Clinical and Diagnostic Laboratory Immunology, May 2000, p. 360-365, Vol. 7, No. 3
1071-412X/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.
Relevance of the Viral RAK Alpha Gene in Diagnosis
of Malignant Versus Nonmalignant Tumors of the Ovary and
Uterus
Eva M.
Rakowicz-Szulczynska*
Department of Obstetrics and Gynecology,
Laboratory of Molecular Oncology, and Department of Biochemistry and
Molecular Biology, University of Nebraska Eppley Cancer Center, and
ViroTech LLC, Omaha, Nebraska
Received 25 June 1999/Returned for modification 16 September
1999/Accepted 14 January 2000
 |
ABSTRACT |
Human immunodeficiency virus type 1 (HIV-1)-like antigens RAK
(named after the inventor E. M. Rakowicz) p120, p42, and p25, as
well as HIV-1-like segments of cancer DNA (RAK gene alpha), have been
found before in breast and prostate cancers. The present study focused
on determining the value of markers RAK in the diagnosis and prognosis
of gynecological cancer. Expression of RAK antigens in ovarian,
uterine, cervical, and vulvar cancer, in benign tumors, in tissues
adjacent to cancer, and in normal tissues was tested by Western blot
hybridization of the electrophoretically separated proteins with
monoclonal antibody RAK BrI. The RAK alpha gene was PCR amplified with
HIV-1-derived primers SK68 and SK69. RAK antigens p120, p42, and p25
were found in 95% of ovarian, uterine, and cervical cancer cases and
in 75% of vulvar cancer cases. The RAK alpha gene was expressed in
100% of cancer cases, in approximately 25% of benign ovarian tumors,
and in 40% of benign tumors of the uterus. DNA sequences amplified in
all cancer cases exhibited more than 90% homology to HIV-1 gp41 and
were encoded for the functional peptide. DNA sequences found in benign
tumors contained frameshift mutations and encoded truncated or
nonfunctional peptides. Such sequences have not been amplified in
normal tissues. RAK antigens and the RAK alpha gene seem to belong to a
lentivirus type that is highly related to HIV-1. Beyond the diagnostic
value of RAK markers, future cloning of the full viral genome would lead to a better understanding of the etiology of malignant and nonmalignant tumors of reproductive organs and to the development of
novel therapeutic approaches.
 |
INTRODUCTION |
Cancers of the reproductive organs
are the most common malignancies in women (7, 13, 19).
Prognostic factors for those patients are directly dependent on the
stage of the cancer at diagnosis. Earlier detection of breast, ovarian,
cervical, or endometrial cancer would significantly increase survival
rates of female patients (9, 20, 30). Only 10% of breast
and 5% of ovarian cancer cases have a documented inherited pattern, associated mainly with the mutated genes BRCA (15, 18, 34) or the oncogene Her-2/Neu (31).
Except for cervical cancer, which is predominantly associated with
human papillomavirus (HPV) (2, 8, 14, 17), a viral etiology
of other types of female reproductive tract cancers remains unverified.
However, the fact that the majority of papillomavirus-infected women do
not develop cervical cancer strongly implies that HPV may be an
important cofactor, but not the direct cause, of that cancer. Recent
studies of herpesvirus-like DNA sequences in AIDS-associated Kaposi's
sarcoma (3) strongly suggest that the role of retroviruses in human cancer was somehow underestimated for a long time.
Viral particles (4, 5, 6, 10, 11, 16) and DNA sequences
(1, 32, 33) with homology to the mouse mammary tumor virus
(MMTV) have been observed in breast cancer for some time. Since
MMTV-like sequences are present in cancer patients, as well as in
healthy patients, an involvement of this virus in the etiology of human
cancer remains controversial. Our recent studies indicated that breast,
ovarian, uterine, cervical, and vulvar cancers in women (22-26,
28, 29) and prostate cancer in men (21) express unique
antigens, named after the investigator E. M. Rakowicz-Szulczynska
(RAK). RAK markers react with the epitope-specific monoclonal antibody
(MAb) directed against human immunodeficiency virus type 1 (HIV-1)
envelope protein gp120 (27). Another MAb (MAb RAK BrI),
developed against RAK antigens, cross-reacts with the GRAF
(glycine-arginine-alanine-phenylalanine) linear epitope of the variable
loop V3 of the HIV-1 envelope protein gp120, which confirms the strong
homology of HIV-1 and RAK proteins. RAK markers p120, p42, and p25,
which exhibit molecular weight correlation with the major proteins
encoded by HIV-1, have been detected in 100% of breast cancer cases
and in 100% of prostate cancer cases. The RAK antigen p160, which
presumably represents a precursor of RAK p120 and p42, was also found
in the serum of the majority of ovarian and cervical cancer patients
(25, 29).
In addition to HIV-1-like antigens, DNA segments (142 bp) with 90 to
96% homology to the HIV-1 gene encoding the transmembrane protein gp41
have also been identified in breast (22, 24) and prostate
cancers (21). The DNA sequences with homology to HIV-1 have
been deposited in the GenBank as the breast and prostate cancer-associated RAK alpha genes.
The viral origin of RAK markers is strongly supported by the finding of
viral particles immunoreactive with MAb anti-HIV-1 gp120 in breast and
cervical cancer cells (22). Antisense oligonucleotides complementary to the HIV-1-like sequences of cancer DNA were found to
affect the activity of the viral reverse transcriptase and to inhibit
the growth of cancer cells in vitro (22). We suggest that
the long-postulated breast cancer virus in fact exists but is related
to lentiviruses (HIV-1) and not to the MMTV as was postulated by some
researchers (22). Recent studies revealed viral particles in
ovarian cancer cells isolated from the abdominal ascites fluid produced
by patients with ovarian carcinoma (27). It is noteworthy
that the production of viral particles was synchronized with syncytium
formation by these cells. The isolated ovarian cancer virus transformed
normal cells (27). Production of viral particles and
syncytium formation were inhibited by MAb anti-HIV-1 gp120, which
suggests that antigen RAK p120 may play a similar role as the gp120
protein in HIV-1-infected T lymphocytes. Syncytia were not formed by
ovarian benign tumor cells, which also did not produce viral particles.
Since similar RAK antigens and related genes RAK alpha were found in
breast, gynecological, and prostate cancers, the identified cancer
virus seems to belong to a broad family of lentiviruses, which might be
involved in the etiology of reproductive tract malignancies.
The current study concentrated on gynecological cancer, which was found
previously to contain HIV-1-like antigens (26, 29). RAK
antigens were found to be expressed by 95% of ovarian, uterine, and
cervical cancer cases, and the HIV-1-like segments of uterine and
ovarian cancer DNA exhibit over 90% homology to HIV-1. Frameshift mutations detected in benign tumors of the ovary and uterus strongly suggest that different variants of the novel lentivirus might lead to
benign versus malignant tumors.
 |
MATERIALS AND METHODS |
Cancer tissue.
The majority of gynecological cancer samples
were provided by the National Cancer Institute Cooperative Human Tissue
Network. Some samples were obtained during the standard surgical
procedures performed by the Department of Obstetrics and Gynecology of
the University of Nebraska Medical Center. Human samples were collected according to Internal Review Board protocols.
MAbs.
MAb RAK BrI has been directed against RAK antigens,
and this MAb cross-reacts with HIV-1 gp160 or gp120 (22).
Cell fractionation.
Sections of cancerous or normal tissues,
obtained during standard surgical procedures, were homogenized in 0.35 M sucrose-10 mM KCl-1.5 mM MgCl2-10 mM Tris-HCl (pH
7.6)-0.12% Triton X-100-12 mM 2-mercaptoethanol (1 ml/cm3 tissue) and centrifuged at 600 × g
for 10 min. The supernatant was the cytoplasmic fraction
(24).
Electrophoresis of proteins.
Proteins were separated in a
7.5 to 15% polyacrylamide gel with 0.1% sodium dodecyl sulfate (SDS)
in 250 mM Tris-HCl (pH 8.3), 195 mM glycine, and 0.1% SDS, according
to the method of Laemmli (12).
Western blotting.
Blotting of proteins from the
polyacrylamide gel to the polyvinylidene difluoride membrane was
performed in 25 mM Tris-HCl (pH 8.6)-192 mM glycine buffer containing
10% methanol. Filters were incubated with 1% bovine serum albumin for
16 h at 0°C and then with MAb anti-HIV-1 gp120 (2 µg/ml) or
MAb RAK BrI (0.1 µg/ml), washed with Tris-glycine buffer, and
incubated with alkaline phosphatase-conjugated goat anti-mouse
immunoglobulin G for 1 h. After being washed with TBST, membranes
were incubated with 0.1% 1-naphthyl-phosphate and Fast Red
(24).
PCR.
PCR occurred in a solution containing 10 mM KCl, 10 mM
(NH4)SO4, 20 mM Tris-HCl, 5 mM
MgCl2, 0.1% Triton X-100, 0.2 mM concentrations of dATP,
dTTP, dCTP, and dGTP, 0.5 µM concentrations of each primer, and 2.5 U
of Taq polymerase. The amount of DNA template used was 1.0 µg/50 µl of the reaction mixture. The reactions ran for 30 cycles
in a Perkin-Elmer 9600 thermal cycler (21, 22). Both primers, SK68 (positions 7801 to 7820, region gp41 Env;
5'-AGCAGCAGGAAGCACTATGG-3') and SK69 (positions 7922 to
7942, region gp41 Env; 5'-CCAGACTGTGAGTTGCAAGAG-3'), were
derived from the HIV-1 genome. All DNA samples which tested negative
with primers SK68 and SK69, as well as approximately 50% of the
PCR-positive samples, were tested with a control set of primers derived
from the globin gene (21). Each set of PCRs included DNA
isolated from HIV-1-infected lymphocytes (positive control). The PCR
mixture was electrophoretically analyzed in a 1.5% agarose gel. DNA
was visualized by UV fluorescence after being stained with ethidium
bromide. Each cancer or normal DNA was tested by PCR three to seven
times in different sets. Samples selected for DNA sequencing were
separated in a 4% agarose gel. PCR bands were encoded by number and
submitted for blind sequencing with primers SK68 and SK69. As a
positive control, the amplified HIV-1 DNA fragment was used for sequencing.
 |
RESULTS |
Cancer association of RAK antigens.
Western blot
hybridizations of proteins from endometrial, cervical, ovarian, and
vulvar cancer with MAb RAK BrI revealed RAK antigens p120, p42, and p25
in the majority of cancer cases (Table 1). Examples of Western blot analysis of
normal and cancer tissue proteins are shown in Fig.
1. Expression of all three RAK antigens was detected in 95.5% of ovarian cancer cases, 96.9% uterine cancer cases, 92.9% of cervical cancer cases, and 75% of vulvar cancer cases
(Table 1). Only 1 of 15 normal ovary cases, 1 of 15 normal fallopian
tube cases, and 2 of 18 normal cervix cases tested positive. All normal
ovary cases and all normal cervix cases originated from cancer
patients; therefore, in the normal population of healthy women the
expression of RAK antigens is expected to be much lower. Expression of
RAK antigens in tissues adjacent to cancer varied from 25 to 36.7%.
Only 3 of 12 benign ovary tumors tested RAK positive, while 33.3% of
the uterine fibroid cases and 50% of the uterine leiomyoma cases
tested RAK positive. In contrast to the strong expression of all three
RAK antigens (RAK p120, p42, and p25) in cancer cases, in benign ovary
or uterine tumors either the expression of RAK antigens was very low or
only two antigens were present.

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FIG. 1.
Detection of RAK antigens in uterine cancer (A, lanes 1 to 3), ovarian cancer (A, lanes 5 and 6), cervical cancer (A, lane 7),
and vulvar cancer (A, lane 8). Lane 4, normal cervical tissue. (B)
Computerized version of panel A. (C to F) Computerized version of panel
A (lanes 1 to 4, respectively) as drawn by the Alpha Imager TM 2000.
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PCR amplification of cancer DNA with HIV-derived primers.
PCR
amplification of cancer DNA with HIV-1-derived primers revealed
amplification bands of 142 bp in cervical cancer (Fig. 2A, lane 3), uterine cancer (Fig. 2A,
lanes 4, 5, and 8; Fig. 2B, lane 4), ovarian cancer (Fig. 2A, lanes 6 and 7), and vulvar cancer (not shown). The majority of DNA from normal
uterine (Fig. 2A, lane 1; Fig. 2E, lane 5), normal cervix (Fig. 2A,
lane 2, Fig. 2E, lane 7), normal ovary (Fig. 2B, lanes 2, 5, Fig. 1E, lane 5), normal vagina (Fig. 1E, lane 3), and normal vulva (Fig. 1E,
lane 4), as well as from other normal tissue DNA, including muscle and
skin (Fig. 2E, lanes 8 and 9), tested negative. Examples of
PCR-positive but histologically normal vulvar and vaginal tissue adjacent to the cancer are shown in Fig. 2B, lanes 6 and 7. An example
of PCR-positive leiomyoma of the uterus is shown in Fig. 1A, lane 9. PCR analysis of breast cancer DNA was described before (21, 22,
24), and all breast DNA samples tested in parallel to
gynecological cancer represent positive and negative controls, respectively (Fig. 2B to E). All breast cancer cases tested PCR positive (Fig. 2C, lanes 6 and 7; Fig. 2D, lanes 3 and 4). Tissue adjacent to cancer tested negative in some patients (Fig. 2C, lane 1)
and positive in others (Fig. 2C, lane 3, and Fig. 2D, lanes 5 and 6).
Breast tissue located at some distance from the cancer margin tested
either negative in some patients or positive in others (Fig. 2B, lane
1; Fig. 2C, lanes 2, 4, 5, 8, and 9). Interesting examples are
represented in Fig. 2C, lanes 4 and 5, where DNA extracted from one
part of the breast tested PCR negative and from the other side tested
positive. In another patient, both fragments of the tissue were PCR
positive (Fig. 2C, lanes 8 and 9).

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FIG. 2.
PCR detection of the RAK alpha gene with HIV-1-derived
primers SK68 and SK69. Abbreviations: C, cancer; N, normal; NAT, tissue
adjacent to cancer; L, leiomyoma; Br, breast; Cer, cervix; Uter,
uterus; Ov, ovary; End, endometrium; Vulv, vulva; Vag, vagina.
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The data summarized in Table 2 indicate
the PCR positivity of 100% of the tested cancer cases and of a
significant percentage of the tissues isolated from the cancer-affected
organs. Truly normal tissues obtained from cancer-free individuals were
PCR negative.
Benign tumors of the ovary were PCR negative in most of the patients.
PCR positivity was observed in 3 of 12 cases. Of 15 cases of benign
tumor of the uterus (leiomyoma), 5 tested positive and 2 tested weakly positive.
To eliminate the possibility that the negative PCR with normal tissue
DNA had been caused by nonspecific inhibition of the amplification
reaction, each DNA sample was also amplified with globin primers. All
SK68- SK69-negative samples were PCR positive with globin primer, as
was the SK68- SK69-positive cancer DNA.
PCR-amplified fragments were isolated from the gel and subjected to DNA
sequencing. Sequencing was done four to six times in both directions.
Figure 3 exhibits sequences amplified in
uterine cancer (patients 21, 28, and 32), benign tumor of the uterus
(patient 30), ovarian cancer (patients 17, 18, and 23), and cancer of
the omentum (patient 24) and in two different cases of benign tumor of
the ovary (patients 19 and 20).

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FIG. 3.
Gynecological cancer-associated RAK alpha gene. DNA
sequences of the RAK alpha gene were amplified in samples of uterine
cancer (U Ca; patients 21, 28, and 32), benign tumors of the uterus (U
Bn; patient 30), ovarian cancer (OvCa; patients 17, 18, and 23), cancer
of the omentum (patient 24), and benign tumor of the ovary (OvBn;
patients 19 and 20).
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DNA sequences amplified in all cancer cases (patients 21, 28, 32, 17, 18, 23, and 24) exhibited more than 90% homology to the sequences
amplified with HIV-1 DNA. Translation of the DNA sequences into amino
acid sequences revealed peptides with >60% homology to the HIV-1
transmembrane protein gp41 (Fig. 4). It is noteworthy that the HIV-1-like peptides exhibited highly conserved mutations, which were present in different cancer patients.
Specifically, methionine in position 11 of the HIV-1 peptide was
replaced by isoleucine in all ovarian and uterine cancer cases.
Glutamine in position 26 was replaced by asparagine in two of three
uterine cancer patients and by lysine in one of four ovarian cancer
patients. Glutamine in position 28 was replaced by proline in four of
seven cancer patients. Glutamic acid in position 36 was replaced by aspartic acid in six of seven patients, and histidine in position 40 was replaced either by isoleucine or by leucine in six of seven patients. The fact that the same codons mutated in a highly conserved way in the majority of the ovarian and uterine cancer cases strongly suggests that these sequences might belong to a retrovirus, closely related to HIV-1, which potentially evolved from a common ancestor.

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FIG. 4.
Gynecological cancer-associated product of the RAK alpha
gene. Amino acid sequences of peptides encoded by the RAK alpha genes
were amplified in the patients specified in Fig. 3: uterine cancer
(patients 21, 28, and 32), benign tumors of the uterus (patient 30),
ovarian cancer (patients 17, 18, and 23), cancer of the omentum
(patient 24), and benign tumor of the ovary (patients 19 and 20). Codon
GCA in Fig. 3 encodes the first amino acid Ala (A) in Fig. 4.
Abbreviations are as defined for Fig. 3.
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DNA sequences amplified in benign ovarian cancer cases are shown in
Fig. 3; patients 19 and 20 and those amplified in leiomyoma of the
uterus are represented by patient 30. It is noteworthy that the DNA
fragment amplified in all benign tumors contained frameshift mutations.
Specifically, sequences amplified in benign tumors of the ovary were
one amino acid longer than fragments amplified in malignant tumors, a
change which was secondary to the insertion of one adenine (A) in codon
14 in patient 19 or of one thymidine (T) in codon 22 in patient 20. Although all other codons showed perfect homology with the sequences
amplified in cancer DNA, the insertion of each nucleotide resulted in
the frameshift mutation, and the encoded peptide would contain a
completely different composition from that found in cancer. In both
benign tumors of the ovary, the translated peptide was only 35 amino
acids long; this was due to the stop codon mutation replacing codon 36 (aspartic acid) (Fig. 4). In contrast to both benign ovary tumors, the
uterine leiomyoma DNA sequences (patient 30) exhibited a deletion of
the third nucleotide (guanine) in codon 33, and the gene containing that frameshift mutation (Fig. 3) would encode a completely different protein (Fig. 4). Other leiomyoma cases showed several mutations leading to the production of "nonsense" proteins (data not shown). This finding strongly suggests that benign tumors of the ovary and
uterus may contain a defective retrovirus compared to malignant tumors,
all of which have functional variants of the same viral sequences.
 |
DISCUSSION |
RAK antigens p120, p42, and p25 are expressed in cancers of the
reproductive organs but are absent in normal tissues and in the
majority of tissues adjacent to the cancer (21, 22, 24, 26, 28,
29). Why cancers of different histological structures, which
originated from completely different tissues, all express these unique
proteins remained for a long time a medical and biological puzzle.
Cancer-limited expression of RAK antigens and the molecular and
immunological similarity of these antigens to HIV-1 major proteins
strongly suggested either that normal human genes are selectively
transcribed in cancer or that a unique virus or family of viruses
affects reproductive organs. The fact that HIV-1 gp41-derived primers
PCR amplified breast cancer (22, 24) and prostate cancer
(21) DNA but not normal tissue DNA, including DNA extracted from tissues adjacent to cancer, strongly supported an exogenous (viral) origin of RAK markers. The HIV-1-like segments of breast cancer
DNA exhibited approximately 90% homology to HIV-1 (22), and
the prostate cancer sequences exhibited almost 95% homology to HIV-1
(21). If we assume that RAK antigens are encoded by a virus
related to HIV-1, then different viruses belonging to the same family
may lead to malignancies of various organs of the reproductive tract
(21, 22).
The comparison of the HIV-1-like segments amplified in ovarian and
uterine cancers (Fig. 3) indicated that conserved mutations are
practically limited to three codons: codon 11, which in HIV-1 encodes
methionine, is replaced in all cancers by the codon for isoleucine;
codon 36 (glutamic acid) is replaced in the majority of cancer cases by
the codon of aspartic acid; and codon 30 (histidine) is replaced by
isoleucine or leucine. Three other codons that are mutated in several
but not all cancer cases include three codons for glutamine in
positions 26, 28, and 39. Comparison of the HIV-1 sequences of the RAK
gene in uterine and ovarian cancers with previously published
HIV-1-like sequences in prostate cancer (21) and breast
cancer (22) indicated that mutations in codons 11, 26, 28, and 36 were common for all cancers, while other mutations were typical
for specific types of cancer. This finding renders the possibility that
a single, sexually transmitted virus might be implicated in various
types of cancers very unlikely. Instead, a family of retroviruses must
exist that have a predilection for different organs. The fact that the
same codons were mutated in both ovarian cancer and uterine cancer DNAs
strongly suggests that the RAK alpha gene evolved from a common ancestor.
Due to the strong homology of the RAK alpha gene to HIV-1 and of the
RAK antigens to the HIV-1 proteins, I suggest that the cancer virus
might also infect lymphocytes and remain inactive for a long time.
Activation by hormones, carcinogens, or opportunistic infections might
lead to activation of the virus and relocation to specific organs. The
latter hypothesis is strongly supported by the finding of RAK p160
(potential precursor of RAK p120 and p42) in the serum of cancer
patients (25, 29).
RAK antigens (p120, p42, and p25) were detected in 95 to 100% of
breast, ovarian, uterine, and cervical cancer cases and in 75% of
vulvar cancer cases (Table 1). Some benign tumors of the uterus and
ovary also tested positive for the expression of RAK antigens, but
usually only one or two antigens were detected or else the expression
of all three antigens was extremely weak. PCR with primers SK68 and
SK69 was also positive in the same benign tumors. Sequencing of one
HIV-1-like fragment amplified in a benign tumor of the uterus and of
DNA sequences amplified in two cases of benign tumors of the ovary
revealed frameshift mutations in all three tumors. Specifically,
patient 30 exhibited deletion of the guanine in codon 33, patient 19 had an insertion of adenine in codon 14, and patient 20 had an
insertion of thymidine in codon 22. The RAK gene with frameshift
mutations would encode either truncated or nonfunctional proteins. DNA
sequences amplified in other cases of benign tumors of the uterus and
those amplified in DNA isolated from vaginal tissue of patients with
benign tumors of the uterus all showed several frameshift mutations
(not shown) coding for truncated proteins.
Although more studies have to be done with various benign versus
malignant tumors, the fact that all ovarian and uterine cancers have
HIV-1-like segments that are highly related to similar segments of DNA
found previously in breast and prostate cancer strongly supports the
diagnostic value of RAK genes. New data indicated that, in addition to
gp41-like sequences, another segment of the HIV-1-like genome (Gag) can
be detected in cancers of the reproductive tract (E. M. Rakowicz-Szulczynska, unpublished data). Inhibition of cancer cell
growth, in parallel to the inhibition of the activity of reverse
transcriptase in the presence of antisense oligonucleotides derived
from the HIV-1-like segment, supports the viral nature of the RAK gene
(22). The mechanism of cancer growth promotion by the novel
virus remains to be further investigated. The growth factor-like
character of RAK antigens might be suggested based on the previously
described (28) cancer growth activation by MAb anti-HIV-1
gp120. Cloning the full genome of the putative virus might reveal
additional critical differences between the virus associated with
malignant and nonmalignant tumors. New therapeutic modalities,
including anticancer vaccines, will have to be taken into consideration
after the viral etiology of the reproductive tract cancers is verified.
 |
ACKNOWLEDGMENTS |
I thank McClure Smith for providing some gynecological cancer
samples and William Snyder and Betty Jackson for technical support. The
excellent editorial assistance provided by Nathan Thrailkill and Anna
Mergen is also gratefully acknowledged. DNA sequencing was done by
Ana-Gen Technologies, Inc.
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FOOTNOTES |
*
Mailing address: University of Nebraska Medical Center,
983255 Nebraska Medical Center, Omaha, NE 68198-3255. Phone: (402) 559-6157. Fax: (402) 559-8112.
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Clinical and Diagnostic Laboratory Immunology, May 2000, p. 360-365, Vol. 7, No. 3
1071-412X/00/$04.00+0
Copyright © 2000, American Society for Microbiology. All rights reserved.