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Clinical and Diagnostic Laboratory Immunology, March 2001, p. 241-244, Vol. 8, No. 2
1071-412X/01/$04.00+0 DOI: 10.1128/CDLI.8.2.241-244.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
Analysis of the 16S rRNA Gene Sequence of Anaplasma
centrale and Its Phylogenetic Relatedness to Other Ehrlichiae
Hisashi
Inokuma,1,2
Yutaka
Terada,3
Tugihiko
Kamio,3
Didier
Raoult,2 and
Philippe
Brouqui2,*
Faculty of Agriculture, Yamaguchi University,
Yamaguchi 753-8515,1 and National
Institute of Animal Health, Tsukuba
305-0856,3 Japan, and Unité des
Rickettsies, Faculté de Médecine, Université de
la Méditerranée, 13385 Marseille, France2
Received 31 August 2000/Returned for modification 19 October
2000/Accepted 20 November 2000
 |
ABSTRACT |
The nucleotide sequence of the Anaplasma centrale 16S
rRNA gene was determined and compared with the sequences of ehrlichial bacteria. The sequence of A. centrale was closely related
to Anaplasma marginale by both level-of-similarity (98.08%
identical) and distance analysis. A species-specific PCR was developed
based upon the alignment data. The PCR can detect A. centrale DNA extracted from 10 infected bovine red blood cells in
a reaction mixture. A. centrale DNA was amplified in the
reaction, but not other related ehrlichial species.
 |
INTRODUCTION |
Anaplasmosis is an arthropod-borne
disease of cattle and other ruminants caused by the intraerythrocytic
rickettsiae of the genus Anaplasma
(18). Based upon location within the infected erythrocyte,
two species of Anaplasma that infect cattle have been described, Anaplasma marginale and
Anaplasma centrale. In addition to having
differences in morphology, these species display differences in
virulence and geographical distribution. A. marginale causes
most severe hemolytic anemia and occurs in all six temperate continents
(23). Although severe disease may also occur with A. centrale, it usually causes only a mild anemia in most cases (18). A. centrale is also widely distributed
but has never been reported in North America. Despite differences in
morphology, distribution, and virulence, A. marginale and
A. centrale appear to be closely related as shown by
comparison of protein and antigenic composition (5, 9, 11-14,
20, 26). Major surface protein 2 is the immunodominant outer
membrane protein in both species and bears epitopes conserved among
species of the Anaplasma group (13, 15,
16). Consequently these two species demonstrated serological
cross-reactions in various studies: complement fixation assay,
capillary tube agglutination test (3), and enzyme-linked immunosorbent assay (6-8). Cross-protective immunity to
A. marginale in cattle can also be acquired by infecting
cattle with A. centrale (1, 4, 12, 22).
Although these observations support a phylogenetic relationship between
A. centrale and A. marginale, the phylogenetic
position of A. centrale has not yet been determined. In this
paper, we report the results of a study of the 16S rRNA gene sequence
of A. centrale. In addition, we developed a species-specific PCR that can amplify a partial sequence of A. centrale 16S
rRNA gene.
 |
MATERIALS AND METHODS |
Ehrlichia strains.
A. centrale Aomori was first
isolated from peripheral blood of infected cattle in the Aomori
prefecture, Japan, in 1966. The isolate was maintained by the National
Institute of Animal Health, Tsukuba, Japan. The heparinized peripheral
blood was taken and kept in 10% glycerin at
80°C until used. The
blood was thawed and fixed with 70% ethanol for international transfer
of the infected blood. Genomic DNA of A. centrale was
extracted by using the QIAamp blood kit procedure (QIAGEN GmbH, Hilden,
Germany). Finally, DNA was extracted in 200 µl of Tris-EDTA buffer
and stored at
20°C until used.
PCR amplification and sequence of A. centrale 16S
rRNA gene.
The amplification of the 16S rRNA of A. centrale was performed by PCR with two sets
of primers, fD1 (5'-AGA-GTT-TGA-TCC-TGG-CTC-AG-3')-EHR16SR (5'- TAG-CAC-TCA-TCG-TTT-ACA-GC-3')
and EHR16SD (5'-GGT-ACC-YAC-AGA-AGA-AGT-CC-3')-Rp2 (5'-ACG-GCT-ACC-TTG-TTA-CGA-CTT-3'), as
described previously (17). EHR16SD and EHR16SR are
Ehrlichia genus-specific primers, and fD1 and Rp2 are the
universal primers. In each test, distilled water and DNA of the
human granulocytic ehrlichia (HGE) agent were included as a negative
and a positive control, respectively. The amplification products were
visualized on a 1% agarose gel after electrophoretic migration of 8 µl of amplified material. The PCR products for DNA sequencing were
purified with QIAquick PCR purification kits (QIAGEN GmbH). For DNA
sequencing reactions, fluorescence-labeled dideoxynucleotide technology
was used (Perkin-Elmer, Applied Biosystems Division, Foster City,
Calif.). The sequencing fragments were separated, and data were
collected on an ABI PRISM 310 Genetic Analyzer (Perkin-Elmer). The
collected sequences were assembled and edited with the AutoAssembler
(version 1.4; Perkin-Elmer). The obtained sequence was confirmed by
performing the same PCR and sequence methods three times.
Data analysis.
The obtained sequence of A. centrale was compared with 16S rRNA gene sequences of related
ehrlichial species and Rickettsia rickettsii deposited in
GenBank. Pairwise percent identities of the sequences with all gaps
omitted were calculated by a program designed by H. Ogata, IGS
CNRS-UMR, Marseilles, France. Multiple alignment analysis, distance
matrix calculation, and construction of a phylogenetic tree were
performed with the CLUSTAL W program (21), version 1.8, available in the DNA Data Bank of Japan (Mishima, Japan
[http://www.ddbj.nig.ac.jp/htmls/E-mail/clustalw-e.html]). The
distance matrices for the aligned sequences with all gaps ignored were
calculated using the Kimura two-parameter method (2), and
the neighbor-joining method was used for constructing a phylogenetic
tree (19). The stability of the tree obtained was
estimated by bootstrap analysis for 1,000 replications using the same
program. Tree figures were generated using the TREEVIEW program,
version 1.61 (10).
Species-specific PCR.
A forward primer, CENTRALE
(5'-CAA-ATC-TGT-AGC-TTG-CTA-CGG-A-3'), was designed based
upon the alignment data and used with the Ehrlichia
genus-specific reverse primer GA1UR
(5'-GAG-TTT-GCC-GGG-ACT-TCT-TCT-3') (24) to
amplify a partial 16S rRNA gene of A. centrale
specifically. PCR conditions were the same as above with an annealing
temperature at 55°C and 40 cycles. The sensitivity of the PCR was
evaluated using a dilution of DNA in water. The specificity of the
reaction was also tested with DNA extracted from related ehrlichial
species: the HGE agent strain Webster (J. S. Dumler),
Ehrlichia equi strain California (J. E. Madigan),
Ehrlichia phagocytophila strain 1602 (A. Garcia-Perez),
A. marginale strains Florida and South Idaho (G. H. Palmer), Ehrlichia platys strain Okinawa (H. Inokuma), Ehrlichia canis strain Oklahoma (J. Dawson), Ehrlichia
chaffeensis strain Arkansas (J. Dawson), Ehrlichia
muris (M. Kawahara), Cowdria ruminantium (C. E. Yunker), Wolbachia pipientis (M. Taylor), Ehrlichia risticii (ATCC), Ehrlichia sennetsu strain Miyayama (G. Dash), and Neorickettsia helminthoeca (Y. Rikihisa).
Sequences for phylogenetic trees.
The species and GenBank
accession numbers of the 16S rRNA gene sequences used to construct
phylogenetic trees are as follows: E. chaffeensis, M73222;
the new Ehrlichia sp. found in Ixodes ovatus
strain Yamaguchi, AF260591; E. muris, U15527;
Ehrlichia ewingii, M73227; E. canis, M73221;
C. ruminantium, AF069758; E. phagocytophila,
M73224; E. equi, M73223; HGE agent, U02521; Ehrlichia bovis, U03775; E. platys, M82801;
A. marginale, M60313, W. pipientis, AF179630;
E. sennetsu, M73225; E. risticii, M21290;
N. helminthoeca, U12457; and R. rickettsii, U11021.
Nucleotide sequence accession numbers.
The sequence of the
partial 16S rRNA gene of A. centrale has been deposited in
the GenBank data library under accession number AF283007.
 |
RESULTS AND DISCUSSION |
PCR using two sets of primers yielded a 1,425-bp nucleotide
sequence. The level of similarity and evolutionary distance between 16S
rRNA gene sequences are shown in Table 1.
The sequence of 16S rRNA A. centrale was most similar to
that of A. marginale, with 98.08% nucleotide identity. It
also had the closest evolutionary distance to A. marginale
(0.019). The related group species, including E. bovis,
E. platys, E. phagocytophila, E. equi,
and the HGE agent, had similar sequences, with levels of sequence
similarity of more than 95% and an evolutionary distance of 0.041 to
0.054. All other species in the family were only distantly related
phylogenically (levels of sequence similarity, 84 to 92%; evolutionary
distance, 0.082 to 0.178). The 16S rRNA gene sequence of A. centrale was included in a phylogenetic tree, and the organism was
demonstrated to be close to A. marginale and the E. phagocytophila group (Fig. 1). The
phylogenetic relationship between A. centrale and A. marginale was significantly independent, with the bootstrap value
of 1,000.

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FIG. 1.
Phylogenetic relationship between A. centrale
and various Ehrlichia spp. based on the 16S rRNA gene
sequences. The neighbor-joining method was used to construct the
phylogenetic tree using the CLUSTAL W program. The scale bar represents
1% divergence. The numbers at nodes are the proportions of 1,000 bootstrap resamplings that support the topology shown.
|
|
Since Weisburg et al. (25) showed the usefulness of 16S
rRNA gene sequence analysis in phylogenetic determination, this approach has been widely used to both identify newly discovered bacteria as well as redefine existing taxonomy. A. centrale
has been thought to be close to A. marginale on the basis of
morphological, protein structural, and immunological studies. The
present results confirm that A. centrale is an independent
species and most closely related to A. marginale by both
level-of-similarity and distance analysis.
Based upon the alignment data of the 16S rRNA gene of ehrlichial
species, a new PCR primer was designed to amplify the A. centrale DNA specifically. The PCR produced a 403-bp fragment of
the 16S rRNA gene with A. centrale DNA extracted from
infected bovine blood cells. No amplification was observed in the
specificity test using other DNA from related ehrlichial species,
including most closely related A. marginale strains (Fig.
2A). Nonspecific bands were not observed
in a reaction with A. centrale, although there
were primer dimer bands in negative controls. With this set of
primers, the PCR can detect A. centrale DNA from 10 infected red blood cells (Fig. 2B). These findings suggest that the PCR can be
used to detect A. centrale DNA specifically from a small amount of cattle blood. Only one strain of A. centrale was
used in the present study for PCR. The positive PCR detection of
A. centrale might be strain specific. Studies with
additional strains of A. centrale and other species may
confirm the sensitivity and specificity of the PCR. PCR is a powerful
tool for epidemiological or diagnostic purposes because of its high
sensitivity and specificity; however, there have been few
molecular tools available for A. centrale
identification until now. Most of the epidemiological data on A. centrale are based on immunological or hematological examination,
and fewer findings have been reported on the epidemiology of A. centrale than on that of A. marginale. The present
study revealed the possibility of developing a PCR to detect
A. centrale. Such a PCR would be a useful tool for
epidemiological studies and the diagnosis of A. centrale in cattle.

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FIG. 2.
(A) A. centrale-specific PCR was evaluated
for its specificity with DNA from A. marginale strains South
Idaho (lane 1) and Florida (lane 2), A. centrale (lane 3),
HGE agent (lane 4), E. equi (lane 5), E. phagocytophila (lane 6), E. platys (lane 7), W. pipientis (lane 8), E. muris (lane 9), E. chaffeensis (lane 10), E. canis (lane 11), C. ruminantium (lane 12), E. risticii (lane 13), E. sennetsu (lane 14), N. helminthoeca (lane 15), and
distilled water (lane 16). (B) The PCR was also evaluated for its
sensitivity with diluted DNA extracted from A. centrale-infected bovine red blood cells. Lane 1 contains DNA
equivalent to that extracted from 103 infected cells.
Consequently, DNA equivalent to that extracted from 102,
101, 100, 10 1, 10 2,
and 10 3 infected cells was used in lane 2 to 7, respectively. Lane M, DNA ladder. Arrows show the 412-bp target band.
|
|
 |
ACKNOWLEDGMENTS |
We thank H. Ogata for analyzing the sequence data and G. H. Palmer for reviewing the manuscript.
H. Inokuma was supported by a grant from the EGIDE, Paris, France.
 |
FOOTNOTES |
*
Corresponding author. Mailing address: Unité des
Rickettsies, Faculté de Médecine, 27 bd. Jean Moulin, 13385 Marseille Cédex 5, France. Phone: (33)-4-91-32-43-75. Fax:
(33)-4-91-83-03-90. E-mail:
Philippe.Brouqui{at}medecine.univ-mrs.fr
 |
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Clinical and Diagnostic Laboratory Immunology, March 2001, p. 241-244, Vol. 8, No. 2
1071-412X/01/$04.00+0 DOI: 10.1128/CDLI.8.2.241-244.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
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