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Clinical and Diagnostic Laboratory Immunology, July 2002, p. 846-851, Vol. 9, No. 4
1071-412X/02/$04.00+0 DOI: 10.1128/CDLI.9.4.846-851.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
Dipartimento di Patologia Sperimentale, Biotecnologie Mediche, Infettivologia ed Epidemiologia, Università degli Studi di Pisa, 56127 Pisa, Italy
Received 7 January 2002/ Returned for modification 7 March 2002/ Accepted 5 April 2002
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1:640. At a serum dilution of 1:1,280, the sensitivity was 50% and the specificity was 86.9%. These results indicate that rICD2 might represent a candidate for use in a new assay for the serodiagnosis of TB. |
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Compelling evidence shows that the 38-kDa PhoS homologue of M. tuberculosis is recognized by Abs in the sera of TB patients with moderate to high degrees of sensitivity and high specificity, and several investigators have proposed its use as a serodiagnostic reagent (1, 2, 8, 15, 25, 35). A few other mycobacterial proteins identified more recently have also been proposed as promising candidates for a multicomponent serodiagnostic assay for TB (5, 14, 20, 29). The completion of the determination of the sequence of the M. tuberculosis genome (4) and the rapid progress in protein identification and molecular cloning that followed (26, 27, 30) are providing new candidates for such a multicomponent serodiagnostic assay.
In the present study, identification and molecular cloning of isocitrate dehydrogenase II (ICD-II), encoded by the icd2 gene of M. bovis BCG, were carried out. A potential application of the recombinant ICD-II protein (rICD2) for the serodiagnosis of TB was also evaluated. The recombinant protein Ag exhibited good sensitivity and specificity, suggesting its possible use as a component of a serodiagnostic test for TB.
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Human sera. Sera were obtained from 16 patients with TB and 23 healthy donors. Diagnosis of TB was confirmed by a positive culture for M. tuberculosis. The patients were 22 to 78 years old; 15 were male and 1 was female. Eleven blood samples were obtained at the beginning of drug therapy, three samples were collected 2 weeks after initiation of therapy, and two samples were collected after 4 weeks of therapy. The healthy individuals whose sera were evaluated were 22 to 34 years old; 9 were male and 14 were female. Eight of them had an anamnesis of BCG vaccination, and 15 did not; 1 had been vaccinated with BCG twice. Delayed-type hypersensitivity to purified protein derivative (PPD) was unknown for most of the healthy individuals. Informed consent was obtained from all the donors, and the protocol was approved by the local ethical committee.
Mouse MAbs and polyclonal Abs. Monoclonal Ab (MAb) WB8A11 was generated from BALB/c mice immunized intraperitoneally (i.p.) with a culture filtrate (CF) Ag of BCG in incomplete Freund's adjuvant (IFA), as described previously (11). A hybridoma cell culture supernatant was used as the MAb in Western blotting assays, and ascitic fluid was used as the MAb in immunoaffinity chromatography assays.
A mouse polyclonal serum, anti-ICD-II, was obtained from C57BL/6 mice (male and female) that had been immunized i.p. with 8 µg of immunoaffinity chromatography-purified ICD-II of BCG in IFA. The mice were boosted twice before the collection of blood samples.
Purification of native Ag of M. bovis BCG. CFs were prepared from 12-day-old cultures of BCG as described previously (10). MAb WB8A11-reacting Ag was purified by immunoaffinity chromatography from CFs of BCG. To this end, ascitic fluid containing MAb WB8A11 was added to Sepharose-protein A at 2 mg/ml of gel slurry and was covalently bound to Sepharose-protein A by use of dimethyl pimelidate as described previously (10). CFs of BCG were added to the gel slurry at 0.5 mg/ml in phosphate-buffered saline (PBS), and the mixture was incubated for 6 h at 4°C with gentle agitation. After washing of the gel with PBS, the protein Ag was eluted with 100 mM Na3PO4 (pH 12.5). One-fifth volume of 1 M sodium phosphate (pH 6.8) was added to the eluate to lower the pH, and the mixture was frozen at -20°C.
Protein identification. Affinity-purified protein that reacted with MAb WB8A11 was loaded onto a 12.5% polyacrylamide gel, and electrophoresis was carried out as described below. The gel was stained with Coomassie brilliant blue R-250 by standard procedures, and the relevant band was excised from the gel. Protein identification was performed by peptide mass fingerprinting with a Voyager Spec mass spectrometer and searches of the TrEMBL (SmartIdent) database at the Swiss-2D-service, Central Laboratory for Clinical Chemistry, University Hospital of Geneva.
Cloning and expression of icd2 gene of M. bovis BCG. The icd2 gene was obtained by PCR amplification from genomic DNA of BCG with a high-fidelity DNA polymerase with proofreading activity (Expand High Fidelity PCR system; Boehringer Mannheim, Mannheim, Germany). Genomic DNA of BCG was obtained as described previously (10). The upstream primer was UPPER24 (5'-GCCTTGGACAGCCTCCAGCGCTGC-3'), and the downstream primer was LOWER25 (5'-ATGAGCGCCGAACAGCCGACCATCA-3'). Amplification reaction mixtures consisted of 20 ng of DNA, 5 µl of 10x Expand buffer (Boehringer Mannheim), 1.5 mM MgCl2, 200 µM deoxynucleoside triphosphates, each primer (primers UPPER24 and LOWER25) at a concentration of 0.1 µM, and 3.5 U of polymerase (Expand High Fidelity PCR System; Boehringer Mannheim) in a final volume of 50 µl. The reaction mixtures were subjected to 30 cycles of 1 min at 95°C, 2 min at 67.5°C, and 3 min at 72°C, followed by 1 cycle of 10 min at 72°C. Ten reaction mixtures were pooled, and the PCR product was purified with GENECLEAN SPIN (Bio 101, Inc., La Jolla, Calif.) according to the supplier's protocol B and inserted into the pBAD TOPO vector (Invitrogen) according to the instructions of the manufacturer. The product from the cloning reaction was used for transformation of One Shot competent E. coli TOP10 cells (Invitrogen). Screening and determination of the insert orientation were performed by restriction analysis of the transformants with restriction endonucleases BamHI and EcoRI (data not shown). The recombinant plasmid containing the icd2 gene of BCG in the correct orientation for regulated expression driven by the araBAD promoter was named pBicd2. The identity of the PCR-amplified icd2 gene was verified by digestion with restriction endonucleases KpnI, EcoRI, BclI, BglI, BglI-KpnI, BclI-KpnI, BclI-BglI, and BclI-EcoRI, followed by electrophoresis on 1.6 to 2% agarose gels (data not shown).
To check for expression of icd2, overnight cultures of E. coli TOP10/pBicd2 in Luria-Bertani broth containing 50 µg of ampicillin per ml were inoculated 1:25 into 5 ml of fresh medium. The cultures were incubated at 37°C with vigorous shaking until the optical density at 600 nm reached 0.6, and then L-arabinose was added to a final concentration of 0.2, 0.02, 0.002, 0.0002, 0.00002, or 0% (negative control). The cultures were incubated for an additional 2 h and 30 min, and then the bacterial cells were pelleted by centrifugation (12,000 x g, 5 min), resuspended in 200 µl of Laemmli sample buffer containing 40 mM dithiothreitol (DTT), boiled for 5 min, and eventually analyzed by sodium dodecyl sulfate (SDS)-polyacrylamide gel electrophoresis (PAGE) and Western blotting with anti-His tag MAb (Sigma). Optimal expression of rICD2 was obtained with concentrations of L-arabinose
0.002% (data not shown).
Purification of rICD2.
For purification of rICD2, an overnight culture of E. coli TOP10/pBicd2 was inoculated 1:100 (vol/vol) into Luria-Bertani broth containing 70 µg of ampicillin per ml. The bacteria were incubated at 37°C with shaking until the optical density at 600 nm reached 0.5 to 0.6, and then the inducer, L-arabinose, was added to a final concentration of 0.005% and the cultures were incubated for an additional 3 h before they were harvested. The bacterial cells were harvested by centrifugation (9,700 x g, 10 min, 25°C), washed once with 1/5 volume of 5 mM
-amino-n-caproate (Sigma), and then resuspended in 1/40 volume of 5 mM
-amino-n-caproate and put on ice; 1 N NaOH was added to adjust the pH to 8, and lysozyme (Sigma) was added to a final concentration of 0.1 mg/ml. The bacterial suspension was incubated for 10 min on ice and then divided into 7-ml aliquots. Each aliquot was sonicated with a probe sonicator at intervals of 1 min with the pulser on and 10 s with the pulser off for a total pulse time of 10 min on ice. One-tenth volume of 200 mM sodium phosphate (pH 7.8)-5 M NaCl (10x native binding buffer) was added to the bacterial lysate, and the mixture was then mixed with ProBond resin (Invitrogen) for batch binding of the His-tagged recombinant protein. Batch binding, washing of the resin, and elution of the recombinant protein were performed by the protocols of the supplier. The eluted protein was precipitated by adding saturated ammonium sulfate to a final saturation concentration of 75%, pelleted by centrifugation, and resuspended in sterile PBS or Laemmli sample buffer. As a final purification step, the recombinant protein was separated from contaminants by preparative SDS-PAGE followed by electroelution with an electroeluter (model 422; Bio-Rad Laboratories, Hercules, Calif.).
Two-dimensional PAGE, SDS-PAGE and Western blotting. For two-dimensional PAGE, the protein was suspended in two-dimensional sample buffer, which consisted of 8 M urea, 0.5% 3-[(3-cholamidopropyl)-dimethylammonio]-1-propanesulfonate, 40 mM DTT, and 2% IPG buffer (pH 4 to 7) (Amersham Pharmacia Biotech). Immobiline Dry Strips (length, 7 cm; pH range, 4 to 7; Amersham Pharmacia Biotech) were rehydrated overnight in a total volume of 150 µl of the protein suspension in two-dimensional sample buffer. Isoelectric focusing was carried out with a Multiphor II apparatus (Amersham Pharmacia Biotech). For separation in the second dimension, strips were equilibrated in 50 mM Tris-HCl (pH 6.8)-8 M urea-30% glycerol-1% SDS-5 mg of DTT per ml for 5 min at room temperature and then for 10 min in 50 mM Tris-HCl (pH 6.8)-10% glycerol-2% SDS and were eventually loaded onto 12.5% polyacrylamide gels. Electrophoresis was carried out in a discontinuous buffer system as described by Laemmli (18). Samples for SDS-PAGE were suspended in Laemmli sample buffer, boiled for 5 min, and then loaded onto 12.5% gels. After electrophoretic separation, the proteins were electrotransferred onto an Immun-Blot polyvinylidene difluoride membrane (Bio-Rad Laboratories) with a Trans-Blot cell (Bio-Rad Laboratories). After transfer onto filters, the proteins were visualized by staining with ponceau S, destained by washing with Tris-buffered saline (TBS; 20 mM Tris, 0.5 M NaCl [pH 7.4]), and then incubated overnight in blocking solution: TBS (pH 7.4) containing 4% bovine serum albumin (BSA). For Western blotting with human sera, each filter with immobilized rICD2 was cut into strips of 2 to 2.5 mm in width, and single serum samples at given dilutions were tested for their abilities to recognize the recombinant protein on each strip. Mouse MAbs, mouse polyclonal Abs, and human sera were diluted in TBS containing 3% BSA. MAb WB8A11 was diluted 1:100, and anti-His tag MAbs and mouse polyclonal sera were diluted 1:1,000; human sera were tested at dilutions ranging from 1:20 to 1:10,240. Peroxidase-conjugated goat anti-mouse immunoglobulin G (IgG) and goat anti-human IgG were used at dilutions of 1:1,000. The blots were developed with 4-chloro-1-naphthol as the substrate.
Statistical analysis. Chi-square analysis and Fischer's exact test were used for statistical evaluation of the results. A P value <0.05 was considered significant.
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In the present study, we purified the WB8A11-reacting Ag by immunoaffinity chromatography from CFs of BCG (Fig. 1). Initial attempts at N-terminal sequencing of the Ag failed, as the native protein was probably being blocked at the amino terminus. Therefore, the purified protein was separated from contaminants by SDS-PAGE, and the relevant band was excised and processed for peptide mass fingerprinting. Searches of the TrEMBL database allowed identification of the protein as ICD-II, encoded by the icd2 gene of M. tuberculosis (TrEMBL accession number O53611). The sequence obtained was used for searches of homologous sequences in the Sanger database, which confirmed the presence of the gene in the M. tuberculosis chromosome (Sanger database accession number Rv 0066c) and the homologous gene in M. bovis. The open reading frame of 2,238 bp, starting with ATG and ending with TGA, codes for a polypeptide of 745 amino acids with a theoretical molecular weight of 82,550 in M. bovis, a theoretical molecular weight of 82,551 in M. tuberculosis H37Rv, a theoretical pI of 5.24 in M. bovis, and a theoretical pI of 5.16 in H37Rv. Comparison of the nucleotide sequence of icd2 of M. tuberculosis with the homologous sequence in M. bovis revealed a very high degree of homology, with the two genes differing from each other at only 2 nucleotides: nucleotide 351, which is C in M. bovis and G in M. tuberculosis, and nucleotide 420, which is A in M. bovis and G in M. tuberculosis. The different nucleotide at position 351 results in a difference in amino acid 117, which is asparagine in M. bovis and lysine in M. tuberculosis, whereas the different nucleotide at position 420 does not result in any difference at the amino acid level, as it is the third nucleotide of redundant codons for leucine (Leu140). Therefore, the predicted proteins differ from each other at only 1 amino acid, which is basic in both organisms. The sequences of the predicted proteins show high degrees of homology with those of ICD-II proteins from other bacteria, as assessed by searches of the National Center for Biotechnology Information database with BLAST software, but not with the sequences of isocitrate dehydrogenase I (ICD-I) proteins from several different bacterial organisms.
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FIG. 1. Immunoaffinity chromatography-purified MAb WB8A11-reacting Ag. (A) Silver staining of a 12.5% polyacrylamide gel; (B) Western blotting with MAb WB8A11. A total of 2 µg of protein of purified Ag was loaded for both SDS-PAGE and Western blotting. The positions of the protein molecular mass markers are indicated on the left of each panel.
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FIG. 2. Expression of rICD2 in E. coli was assessed by Western blotting with anti-His tag MAb of lysates of TOP10/pBicd2 and TOP10/pBAD TOPO (negative control) induced with L-arabinose or uninduced. Lanes 1 and 2, whole-cell lysate of TOP10/pBicd2; lanes 3 and 4, TOP10/pBAD TOPO; lanes 1 and 3, uninduced; lanes 2 and 4, induced with L-arabinose. The positions of the protein molecular weight markers are indicated on the left.
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FIG. 3. Silver-stained two-dimensional gel (A) and two-dimensional Western blot of purified rICD2 with MAb WB8A11 (B), anti-His tag MAb (C), or anti-ICD-II polyclonal serum from a C57BL/6 mouse (D). The positions of the protein molecular mass markers are indicated on the left of each panel; the pI ranges are indicated at the bottom of each panel.
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FIG. 4. Recognition of rICD2 by IgG from human serum by Western blotting. A serum sample from a patient with TB was tested for recognition of purified rICD2 at dilutions ranging from 1:80 to 1:5,260 (lanes 1 to 6); lane 7, positive control (MAb WB8A11); lane 8, negative control (incubation in TBS-3% BSA followed by incubation with peroxidase-conjugated goat anti-human IgG). The positions of the protein molecular mass markers are indicated on the left.
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FIG. 5. Number of TB patients (TB) and healthy subjects (H) giving positive reactions for anti-rICD2 by Western blotting with different serum dilutions (indicated below). The purified rICD2 for which the results are shown in Fig. 3 was used in these experiments. , positive result; , negative result; ***, P 0.001; *, P 0.05.
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In a previous study, analysis of fractions enriched in components of different cellular compartments of BCG with MAb WB8A11 indicated the presence of an Ag in the cell wall as well as other cellular compartments that reacted with MAb WB8A11 (11). Identification of the ICD-II enzyme suggested that the presence of an Ag in the cell wall fraction that reacted with MAb WB8A11 might be due to protein precipitation during preparation of the fractions. This hypothesis is reinforced by our observation that rICD2 of BCG tends to precipitate after freezing-thawing (data not shown). MAb WB8A11 recognized the recombinant protein, indicating that the epitope that reacts with MAb WB8A11 is present in the recombinant protein, and antibodies in the sera of genetically different mice immunized with the purified native protein also recognized the recombinant protein (Fig. 3).
Considering the limited distribution of ICD-II among prokaryotes and its ability to elicit Ab responses, in order to evaluate its potential use for serodiagnosis of TB we cloned the icd2 gene of BCG, purified the recombinant protein, and tested the recombinant protein for its ability to recognize IgG Abs in the sera of TB patients as well as healthy subjects. Several Ags have been tested for their abilities to recognize Abs in the sera of TB patients and healthy individuals in different laboratories, but no test with a single Ag has proved to be able to achieve sensitivities and specificities comparable to those of isolation by culture and identification of the bacillus in a study population suitably large and heterogeneous (21, 29, 34). Because of the diversity of humoral responses to infection with tubercle bacilli (21, 23, 29), serological tests based on a single Ag have been reported to be unsuited for the diagnosis of TB, as they are unlikely to be confirmatory (25, 32).
Few known Ags of tubercle bacilli in CFs are recognized by Abs in the sera of TB patients and PPD-positive individuals by Western blotting with a serum dilution of 1:200 (28, 29), and recognition of a very limited number of Ags has been observed in PPD-negative healthy individuals even at a serum dilution of 1:50 (29). On the other hand, the pattern of recognition of Ags of tubercle bacilli might be variable depending on the genetic background and other variables of the study population (15, 34), the stage of the disease and the location of the infection (32), and the specific characteristics of the assay (25). A multicomponent serological test might overcome some of the variables mentioned above (13). Ideally, the single components should have complementary properties (5) that allow differentiation of HIV-positive and HIV-negative TB patients (14, 29) and patients with different genetic backgrounds, patients at different stages of the disease, and patients with different locations of infection (29).
The ICD-II protein of tubercle bacilli would need further investigation to confirm its potential for use as a component of a test for the serodiagnosis of TB. The limited reactivity of MAb WB8A11 with CF preparations from a few species of pathogenic mycobacteria (11), together with the results of this study, suggest that ICD-II might contain pathogen-specific epitopes. These hypothetical epitopes might be identified by testing the abilities of Abs in the sera of TB patients as well as healthy donors to recognize partially overlapping synthetic peptides covering the polypeptide sequence of ICD-II.
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