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Clinical and Diagnostic Laboratory Immunology, November 2002, p. 1277-1281, Vol. 9, No. 6
1071-412X/02/$04.00+0 DOI: 10.1128/CDLI.9.6.1277-1281.2002
Copyright © 2002, American Society for Microbiology. All Rights Reserved.
Department of Diagnostic Medicine-Pathobiology,1 Department of Anatomy and Physiology, Kansas State University, Manhattan, Kansas 66506,2 Nebraska Center for Virology, School of Biological Sciences, University of Nebraska, Lincoln, Nebraska 695883
Received 2 April 2002/ Returned for modification 20 May 2002/ Accepted 6 August 2002
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Both BIV and JDV resemble human immunodeficiency virus (HIV) in their biological, antigenic, and structural properties. Among the three major structural proteins (encoded by gag, pol, and env), the Gag protein develops the earliest and strongest antibodies in infected animals. The BIV Gag precursor (Pr53gag) can be processed into three major proteins (the matrix [MA], capsid [CA], and nucleocapsid [NC] proteins) and three smaller proteins (proteins p2L, p3, and p2). The order of these six proteins in a Gag precursor is NH2-p16MA-p2L-p26CA-p3- p13NC-p2-COOH. The proteins have molecular masses of 14.6, 2.5, 24.6, 2.7, 7.3, and 1.9 kDa, respectively (20). The strong conservation of Gag epitopes of BIV and HIV type 1 (HIV-1) has been demonstrated by the serological cross-reactivity between the two virus capsid proteins. The cross-reactivity of sera from BIV-infected cattle against JDV recombinant capsid protein has been reported (4, 11). The similarity of the gag genes between BIV and JDV is approximately 62% at the amino acid level, and the capsid proteins of the two viruses have a higher degree of amino acid identity (75%). Serological tests that detect antibody to the capsid protein of JDV or BIV may not differentiate the two viruses (23).
The BIV gag gene has been cloned, and monoclonal antibodies (MAbs) to recombinant Gag protein have been developed (22, 25, 26). One of our MAbs, designated 10H1, reacts specifically with the BIV Gag protein but not with the JDV Gag protein, indicating that BIV has at least one epitope different from JDV epitopes. The epitope has already been located at the 6.4-kDa N terminus of a pATH gag-3 clone (1, 25) which expresses a 29-kDa Gag protein. Detailed knowledge of the epitope would help to elucidate the structural basis of antigen-antibody recognition to evaluate protein-protein interactions. Identification of antigenic epitopes may also be important to explore future vaccine strategies (12, 16). The present study was aimed at defining the makeup of amino acids required for the unique epitope and elucidating the molecular mechanisms by which MAb 10H1 differentiates the BIV Gag protein from the JDV Gag protein.
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Construction of expression plasmids. We designed primers with sequences specific within the 163-bp DNA region corresponding to the 6.4-kDa protein (25). For cloning of BIV gag fragments into the pQE32 expression vector (QIAGEN), the forward primers had BamHI restriction sites at their 5' ends, and the reverse primers had HindIII sites at their 3' ends. For cloning of the deduced epitope into the pQE30Xa expression vector (QIAGEN), the forward primer had an StuI restriction site at the 5' end, and the reverse primer had an HindIII site at the 3' end. PCR amplification with the primers added the restriction sites to the ends of the PCR products. The PCR products were cloned into pGEM-T Easy Vectors by a standard procedure (Promega), and the T vectors were transformed into Escherichia coli strain JM109. Subsequently, the PCR products were purified, digested with the corresponding restriction enzymes, and separated by electrophoresis on a 1% agarose gel. The BIV gag fragments were cloned into the pQE32 expression vector at the BamHI-HindIII restriction sites, and the deduced epitope was cloned into a pQE30Xa expression vector at the StuI-HindIII restriction sites. The sequences and the reading frames were confirmed by the dideoxyribonucleotide chain termination method.
Expression of proteins. E. coli strain M15 was transformed with a pQE32-gag construct, a pQE30Xa-epitope construct, or a relevant vector alone as a negative control and was grown at 37°C overnight in 1 ml of Luria-Bertani (LB) broth containing ampicillin and kanamycin. The cultures were then inoculated with 4 ml of fresh LB broth containing the same antibiotics and were incubated for 30 min at 37°C. Isopropyl-ß-D-thiogalactopyranoside was added to a final concentration of 2 mM to induce protein expression. After 4 h of induction, the cells were harvested by centrifugation at 3,000 x g for 15 min and lysed by heating for 5 min in 500 ml of a 1:1 mixture of phosphate-buffered saline buffer and 2x sample loading buffer (0.125 M Tris, 20% glycerol, 4% sodium dodecyl sulfate, 1% 2-mercaptoethanol).
Western blot assay. The protein samples were loaded onto a discontinuous Tricine gel (16.5% T, 6% C) (15). Electrophoresis was run at a constant voltage of 30 V for 1 h and then at 100 V for about 4 h. The proteins were then transferred onto a nitrocellulose membrane at a constant voltage of 100 V for 1 h with a transblot apparatus. The membrane was blocked with 2% bovine serum albumin in phosphate-buffered saline containing 0.1% Tween 20 and incubated with MAb 10H1 at 1:2,000 dilutions at room temperature for 2 h or at 4°C overnight. Anti-mouse immunoglobulin G peroxidase conjugate (Promega) was added at 1:3,000, and the mixture was left for 30 min at room temperature. Specific protein bands were detected with the standard enhanced chemiluminescence reagent (Amersham Pharmacia Biotech).
Dot and block blotting. A 6-amino-acid peptide (S-6aa) from the C terminus of the BIV matrix protein, a 20-amino-acid peptide (S-20aa) from the N-terminal portion of the p2L protein, and the combined 26-amino-acid peptide (S-26aa) were synthesized (courtesy of the Biotechnology Core Facility of Kansas State University). For dot blotting, the peptides were dissolved in distilled water at 0.5 µg/ml and the solutions were dotted onto a nitrocellulose membrane. The dotted membrane was air dried and used to complete the Western blotting as described above. For block blotting, two synthetic peptides, S-26aa and S-20aa, along with the proteins expressed from the pQE30Xa-epitope clone were separated by use of the Tricine gel and transferred onto nitrocellulose membranes. The membranes were prepared and blotted in the same way as described above, except that MAb 10H1 was preabsorbed with synthetic peptides at a concentration of 1 mg in 20 ml of the blocking buffer for 1 h at room temperature.
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FIG. 1. Expression of the 6.4-kDa N terminus of the BIV Gag capsid protein (pATH clone). The full-length 29-kDa Gag capsid protein expressed by the pQE32-gag construct (lane 3) and N-terminal 6.4-kDa protein R114-R167 expressed in vector pQE32 (lane 2) reacted positively with MAb 10H1 by Western blotting. E. coli strain M15 transformed with vector pQE32 (lane 1) was used as the negative control.
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FIG. 2. PCR-based mapping of MAb 10H1-specific epitope. The peptide sequences of Gag fragments in the N-terminal 6.4-kDa protein (R114-R167) were expressed. The DNA fragments were amplified by PCR, purified from the gel, and cloned into vector pQE32. The vectors were expressed in E. coli strain M15. Western blotting was done with MAb 10H1. The Western blotting results are designated as follows: +, positive; +/-, significantly reduced positive; -, negative.
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FIG. 3. Block blotting of MAb 10H1 by the synthetic epitopes. Lane 1, S-26aa; lane 2, S-20aa; lane 3, E. coli strain M15 transformed with the pQE30Xa expression vector as a negative control; lane 4, E. coli strain M15 transformed with pQE30Xa engineered with the DNA sequence of the deduced epitope. The four plots were not blocked (Non-block) or were blocked with S-6aa, S-26aa, and S-20aa, as indicted above each panel.
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FIG. 4. Diagram of the proteolytic products of BIV Pr53gag and the amino acid sequence (R114-R167) in which the MAb 10H1-specific epitope is located. (A) Proteolytic cleavage products of BIV Gag proteins (Pr53gag). The BIV Gag proteins shown are p16MA, p2L, p26CA, p3, p7MC, and p2. (B) MAb 10H1-specific amino acid sequence that covers 13 residues (R114 to R126) of p16MA, 22 residues (R127 to R148) of p2L, and 19 residues (R149 to R167) of p26CA. The region in boldface type indicates where the epitope mapped.
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FIG. 5. Alignment of the BIV epitope and the JDV Gag protein. Peptide sequences were aligned by use of the Genetics Computer Group GAP program. The 26-amino-acid peptide of BIV was aligned against 255 amino acids of the JDV Gag protein. The corresponding regions are shown. Both the BIV p2L protein and the JDV capsid protein start with proline. Vertical lines indicate amino acids that are identical in the two sequences. MA, matrix protein; CA, capsid protein.
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Numerous epitopes for HIV have been identified in the lentiviruses. HIV-1 gag-encoded cytotoxic T-lymphocyte epitopes, for example, are composed of 7 to 10 amino acids. The BIV MAb 10H1-specific epitope has been mapped to a 26-amino-acid region and may not be the minimal size for an epitope. The techniques that we used may not be suitable for the purpose of fine mapping for two reasons. First, the fragments are too small to be engineered into a construct. Second, the flanking amino acids from vector parts may interfere with the reaction between the epitope and the antibody. Our failure to express the 26-amino-acid epitope in vector pQE32 may be due to the second problem (data not shown). This suggests that the epitope could be narrowed to a smaller region around the cleavage site. Alternatively, the epitope may be affected by the structure of the 26-amino-acid sequence, which was predicted to be a helix-turn-helix structure by the Genefold module of Sybyl (Tripos, St. Louis, Mo.). To resolve this problem, residues in the middle of the 26-amino-acid sequence should be mutated to determine their role in antibody specificity. The use of synthesized peptides is a relatively direct and efficient way for final mapping of an epitope, but such peptides are expensive. Techniques based on phage display or gene fragment libraries have been successful for the rapid identification of a tobacco mosaic virus epitope (7, 10). Perhaps these techniques could eliminate some of the problems and may help map the BIV MAb 10H1-specific epitope to a minimal size.
We mapped the epitope to a unique region which spans the BIV matrix protein and the short protein p2L. Among the lentiviruses, only the BIV Gag protein contains the intragenic peptide (p2L) between the matrix and capsid proteins. For JDV, the p2L short protein was suggested to be incorporated into the capsid protein (6) or to be absent, as shown in this study. Only 3 of the 20 amino acids between the BIV p2L protein and the JDV capsid protein in the corresponding region are identical. This projects the molecular difference between BIV and JDV Gag proteins and explains why MAb 10H1 does not react with JDV. Field isolates of BIV contain p2L, and despite the p2L sequence heterogeneity, the residues in the cleavage sites are well conserved (20). In general, due to the molecular difference and the conservation of the cleavage sites, the MAb 10H1-specific epitope is unique in distinguishing BIV from JDV. This MAb not only reacts specifically with both the BIV capsid protein and the recombinant fusion protein (25) but also recognizes BIV-infected bovine lung cells (Charles Wood, personal communication; data not shown), suggesting the potential value of MAb 10H1 and the unique epitope.
JDV is a lentivirus closely related to BIV in terms of its morphogenesis, protein structure, and antigenic reactivity and by sequence analysis. Alignment of the gag gene products of JDV and BIV showed strong overall amino acid identity (62%), with the matrix protein identity being 60%, the capsid protein identity being 75%, and the nucleocapsid protein identity being 63% (6). The high degree of amino acid conservation explains the difficulty in differentiating the two viruses, either by biological means or by use of molecular technology. BIV is widespread, while JDV is restricted to parts of Indonesia. Distinguishing the two closely related viruses with MAbs will be important in evaluations of the epidemiology of the disease and for quarantine purposes. The matrix protein-p2L cleavage site not only is unique for BIV in relation to JDV but also is highly conserved, so the unique epitope may be useful for future study of BIV.
Similar to the results that we have presented for BIV Gag, MAbs that map to the p17-p24 cleavage site of HIV Gag have been identified by other investigators, with determinants of antibody binding found to be located on both p17 and p24 (14). The MAb was also shown to inhibit cleavage at the p17-p24 site. Another group (13) has shown that MAb to a p17-derived peptide alone inhibits infection of cells by HIV Gag. Taken together, the results suggest that MAbs to Gag cleavage sites in bovine lentiviruses may be further explored for their ability to interact with and/or inhibit different strains of lentiviruses.
Contribution 02-245-J from the Kansas Agriculture Experiment Station. ![]()
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